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Clarke, J.M., Peck, C.H., 1906. Report of the State Botanist 1905, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Merrill, F.J.H., Clarke, J.M., 1902. Report of the State Paleontologist 1901, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Merrill, F.J.H., Clarke, J.M., 1903. Report of the State Paleontologist 1902, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Merrill, F.J.H., Clarke, J.M., 1903. Report of the State Paleontologist 1902, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Clarke, J.M., 1905. Report of the State Paleontologist 1903, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Luther, D.D., Clarke, J.M., 1904. Stratigraphic and Paleontologic Map of Canandaigua and Naples Quadrangles, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Clarke, J.M., Luther, D.D., 1904. Stratigraphic and Paleontologic map of Canandaigua and Naples quadrangles, New York State Museum Bulletin. The University of the State of New York, Albany, New York.
Book Chapter
Clarke, J.M., 1901. Amnigenia as an Indicator of Freshwater Deposits during the Devonic of New York, Ireland and the Rhineland, in: Merrill, J.H., Clarke, J.M. (Eds.), Paleontologic Papers 2. The University of the State of New York, Albany, New York, pp. 199-204.
Clarke, J.M., 1901. Amnigenia as an Indicator of Freshwater Deposits during the Devonic of New York, Ireland and the Rhineland, in: Merrill, J.H., Clarke, J.M. (Eds.), Paleontologic Papers 2. The University of the State of New York, Albany, New York, pp. 199-204.
Parker, A.C., 1925. Archeology, in: Clarke, J.M. (Ed.), Twentieth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 57-61.
Parker, A.C., 1924. Archeology and Ethnology, in: Clarke, J.M. (Ed.), Nineteenth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 44-48.
Parker, A.C., 1920. Archeology and Ethnology, in: Clarke, J.M. (Ed.), Seventeenth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 41-49.
Clarke, J.M., 1919. Armstrongia: A New Genus of Devonian Glass Sponges, in: Clarke, J.M. (Ed.), Fifthteenth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 143-146.
Clarke, J.M., 1919. Armstrongia: A New Genus of Devonian Glass Sponges, in: Clarke, J.M. (Ed.), Fifthteenth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 143-146.
Clarke, J.M., 1908. The Beginings of Dependent Life, in: Clarke, J.M. (Ed.), Fourth Report Of The Director Of The Science Division. The University of the State of New York, Albany, New York, pp. 146-169.
Clarke, J.M., 1908. The Beginings of Dependent Life, in: Clarke, J.M. (Ed.), Fourth Report Of The Director Of The Science Division. The University of the State of New York, Albany, New York, pp. 146-169.
Ruedemann, R., 1903. Cambric Dictyonema Fauna in the Slate Belt of Eastern New York, in: Merrill, J.H., Clarke, J.M. (Eds.), Report Of The State Paleontologist 1902. The University of the State of New York, Albany, New York, pp. 934-954.
Beede, J.W., 1911. The Carbonic Fauna of the Magdalen Islands, in: Clarke, J.M. (Ed.), Sixth Report Of The Director Of The Science Division. The University of the State of New York, Albany, New York, pp. 93-106.
Parker, A.C., 1918. Champlain's Assault on the Fortified Town of the Oneidas 1615, in: Clarke, J.M. (Ed.), Fourteenth Annual Report Of The State Museum And Science Department. The University of the State of New York, Albany, New York, pp. 165-173.
Clarke, J.M., 1924. A Colossal Devonian Glass Sponge, in: Clarke, J.M. (Ed.), Eighteenth Report Of The Director Of The State Museum Science Department. The University of the State of New York, Albany, New York, pp. 121-122.

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