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Hall, J., 1857. Direction of the Currents of Deposition and Source of the Materials of the Older Paleozoic Rocks. Canadian Naturalist and Quarterly Journal of Science 2, 284-286.
Hall, J., 1879. The Hydraulic Beds and Associated Limestones at the Falls of the Ohio. Transactions of the Albany Institute 9, 169-180.
Hall, J., 1883. The New York Geological Survey. Popular Science 22, 815-825.
Hall, J., 1869. Report of the Curator. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 22, 1-8.
Hall, J., 1848. Agricultural Geology. Genesee Farmer and Gardener's Journal 9, 103-105.
Hall, J., Fritz-Gaertner, R., 1878. On the Structure of Astraeospongia meniscus. New York State Museum Annual Report 30, 111-116.
Hall, J., 1859. Observations on the Genus Nucleospira. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 24-26.
Hall, J., 1860. On the Formation of Mountain Ranges. Canadian Journal of Natural Sciences 5, 542-544.
Hall, J., 1843. Section on the Shore of Lake Erie. American Journal of Science 45, 327-328.
Hall, J., 1885. Report of Geologist. New York State Museum Annual Report 38, 61-65.
Hall, J., Clarke, J.M., 1898. A Memoir on the Paleozoic Reticulate Sponges Constituting the Family Dictyospongidae, New York State Museum Memoir. The University of the State of New York, Albany, New York.
Haines, J.H., 2005. Mushrooms, in: Eisenstadt, P., Moss, L.E.-. (Eds.), The Encyclopedia Of New York State. Syracuse University Press, Syracuse, NY, pp. 1027-1028.
Haines, J.H., Lichstein, E., Glickerman, D., 1986. A Fatal Poisoning from an Amatoxin Containing Lepiota. Mycopathologia 93, 15-17. doi:10.1007/BF00437009
Haines, J.H., 2005. The Art of the Mushroom. Legacy: The Magazine of the New York State Museum 1, 8-9.
Haines, J.H., Kohler, S.A., 1986. An Evaluation of Ortho-Phenyl Phenol as a Fungicidal Fumigant for Archives and Libraries. Journal of the American Institute for Conservation 25, 49-55. doi:10.1179/019713686806028078
Hadly, E.A., Feranec, R.S., 2016. Paleovertebrate communities, in: Mooney, H., Zavaleta, E. (Eds.), Ecosystems Of California. pp. 155-168.