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1859
Hall, J., 1859. Notice of the Genera Ambonychia, Palaearca, and Megambonia. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 8-14.
Hall, J., 1859. Observations on Genera of Brachiopoda. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 27-44.
Hall, J., 1859. Observations on the genera Capulus, Pileopsis, Acroculia, and Platyceras. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 15-19.
Hall, J., 1859. Observations on the genera Platyostoma and Strophostylus. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 20-21.
Hall, J., 1859. Observations on the Genus Nucleospira. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 24-26.
Hall, J., 1859. Supplementary Note on the Genus Ambonychia. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 110.
Hall, J., 1859. Trilobites of the Shales of the Hudson River Group. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 59-62.
1860
Hall, J., 1860. Contributions to Palaeontology, 1858 and I859. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 13, 53-125.
Hall, J., 1860. Descriptions of New Species of Fossils from the Silurian Rocks of Nova Scotia. Canadian Naturalist and Quarterly Journal of Science 5, 144-159.
Hall, J., 1860. On the Formation of Mountain Ranges. Canadian Journal of Natural Sciences 5, 542-544.
Hall, J., 1860. Supplementary Note on Palaeontology of New York v.3. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 13, 126-128.
1862
Hall, J., 1862. Contributions to Palaeontology; Comprising Descriptions of New Species of Fossils from the Helderberg, Hamilton and Chemung Groups. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 15, 27-197.
Hall, J., 1862. On the Potsdam sandstone and Hudson River rocks in Vermont. American Journal of Science 33, 106-108.
Hall, J., 1862. Sur la Faune Primordiale en Amerique. Bulletin de la Societe Geologique de France 19, 725-734.
1863
Hall, J., 1863. Contributions to Palaeontology.. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 16, 17-226.

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