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Hall, J., 1859. Observations on the genera Platyostoma and Strophostylus. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 20-21.
Hall, J., 1859. Observations on the Genus Nucleospira. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 24-26.
Hall, J., 1859. Observations on Genera of Brachiopoda. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 27-44.
Hall, J., 1859. Notes Upon the Genus Graptolithus. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 45-58.
Hall, J., 1859. Trilobites of the Shales of the Hudson River Group. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 59-62.
Hall, J., 1859. Supplementary Note on the Genus Ambonychia. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 110.
Hall, J., 1859. New American Trilobites [from Hudson River group of Vermont]. Canadian Journal of Natural Sciences 4, 491-493.
Hall, J., 1860. Contributions to Palaeontology, 1858 and I859. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 13, 53-125.
Hall, J., 1860. Supplementary Note on Palaeontology of New York v.3. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 13, 126-128.
Hall, J., 1860. Descriptions of New Species of Fossils from the Silurian Rocks of Nova Scotia. Canadian Naturalist and Quarterly Journal of Science 5, 144-159.
Hall, J., 1860. On the Formation of Mountain Ranges. Canadian Journal of Natural Sciences 5, 542-544.
Hall, J., 1861. Contributions to the Palaeontology of New York Being Some of the Results of Investigations Made During the Years 1859 and 1860. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 14, 87-110.
Hall, J., 1861. On the Primordial Fauna and Point Levis, Quebec, Fossils. American Journal of Science 31, 220-226.
Hall, J., 1862. Contributions to Palaeontology; Comprising Descriptions of New Species of Fossils from the Helderberg, Hamilton and Chemung Groups. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 15, 27-197.
Hall, J., 1862. On the Potsdam sandstone and Hudson River rocks in Vermont. American Journal of Science 33, 106-108.
Hall, J., 1862. Sur la Faune Primordiale en Amerique. Bulletin de la Societe Geologique de France 19, 725-734.
Hall, J., 1863. Contributions to Palaeontology.. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 16, 17-226.
Hall, J., 1864. Preliminary Notice of Some Species of Crinoida rfom the Waverly Sandstone Series of Summit County, Ohio, Supposed to be the Age of the Chemung Group of New York. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 17, 50-60.

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