Ralston, J., and Kirchman, J. J. 2013. Predicted Range Shifts in North American Boreal Forest Birds and the Effect of Climate Change on Genetic Diversity in Blackpoll Warblers (Setophaga striata). Conservation Genetics 14(2):543-555.

Ralston, J., and Kirchman, J. J. 2012. Continent-scale Genetic Structure in a Boreal Forest Migrant, the Blackpoll Warbler (Setophaga striata). The Auk 129:467-478.

Kirchman, J. J., Schirtzinger, E. E., and Wright, T. F. 2012. Phylogenetic Relationships of the Extinct Carolina Parakeet (Conuropsis carolinensis) Inferred From DNA Sequence Data. The Auk 129(2):197-204.

LeCroy, M., Kirchman, J. J., and Horst, L. 2012. Rediscovery of Missing Specimens Once Held at Vassar College, Including the Holotype of Baudo Guan Penelope ortoni. Bulletin of the British Ornithologists' Club 132:222-224.

Kirchman, J. J. 2012. Speciation of Flightless Rails on Islands: A Dna-Based Phylogeny of the Typical Rails of the Pacific. The Auk 129(1):56-69.

Kirchman, J. J., Ralston, J., and Gifford, N. A. 2011. Stable Isotope Analysis of Fall Migration Stopover by Six Passerine Species in an Inland Pitch Pine-Scrub Oak Barren. The Wilson Journal of Ornithology 123:548-556.

Kirchman, J. J. 2010. Carolina Parakeets. Legacy: The Magazine of the New York State Museum 6(2):16.

Kirchman, J. J., Witt, C. C., McGuire, J. A., and Graves, G. R. 2010. DNA from a 100-year-old Holotype Confirms the Validity of a Potentially Extinct Hummingbird Species. Biology Letters 6(1):112-115.

Kirchman, J. J. 2010. Legalities and Practicalities of Salvaging of Dead Birds for Museum Specimens. The Kingbird 60(4):298-300.

Kays, R. W., Curtis, A., and Kirchman, J. J. 2010. Rapid Adaptive Evolution of Northeastern Coyotes via Hybridization with Wolves. Biology Letters 6:89-93.

Kays, R. W., Curtis, A., and Kirchman, J. J. 2010. Reply to Wheeldon et al. 'Colonization History and Ancestry of Northeastern Coyotes'. Biology Letters 6:248-249.

Feranec, R. S., Cryan, J. R., and Kirchman, J. J. 2009. Evolution Every Day. Legacy: The Magazine of the New York State Museum 4(4):10-11.

Kirchman, J. J. 2009. Extinct Birds. Legacy: The Magazine of the New York State Museum 4(4):8-9.

Kirchman, J. J. 2009. Genetic Tests of Rapid Parallel Speciation of Flightless Birds from an Extant Volant Ancestor. Biological Journal of the Linnean Society 96:601-616.

Kirchman, J. J. 2009. Natural History Collections and Evolution. Legacy: The Magazine of the New York State Museum 4(4):14.

Kirchman, J. J. 2008. Bird Egg Specimens: An Ova-looked Treasure. Legacy: The Magazine of the New York State Museum 3(4):8-9.

Raoult, D., Reed, D. L., Dittmar, K., Kirchman, J. J., Rolain, J-M, Guillen, S., and Light, J. E. 2008. Molecular Identification of Lice from Pre-Columbian Mummies. The Journal of Infectious Diseases 197:535-543.

Kirchman, J. J. 2008. The New York State Museum Bird Collection: A Resource for Educators and Ornithologists. The Kingbird 58(3):214-219.

Kirchman, J. J., and Franklin, J. D. 2007. Comparative Phylogeography and Genetic Structure of Vanuatu Birds: Control Region Variation in a Rail, a Dove, and a Passerine. Molecular Phylogenetics and Evolution 43:14-23.

Kirchman, J. J., and Steadman, D. W. 2007. New Species of Extinct Rails (Aves: Rallidae) from Archaeological Sites in the Marquesas Islands, French Polynesia. Pacific Science 61(1):145-163.

Reed, D.L., Light, J.E., Allen, J.M., and Kirchman, J.J. 2007. Pair of Lice Lost or Parasites Regained: The Evolutionary History of Anthropoid Primate Lice. BMC Biology 5(7):doi:10.1186/1741-7007-5-7.

Kirchman, J. J. 2007. Searching for the Ivory-billed Woodpecker. Legacy: The Magazine of the New York State Museum 2(4):7.

Kratter, A.W., Kirchman, J.J., and Steadman, D.W. 2006. Upland Bird Communities on Santo, Vanuatu, South Pacific. Wilson Journal of Ornithology 118:295-308.