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Stoner, D., 1945. Temperature and Growth Studies of the Northern Cliff Swallow. The Auk 62, 207-216. doi:10.2307/4079698
Stoner, D., 1938. The English Sparrow and Highway Mortality. The Wilson Bulletin 50, 63-64.
Stoner, D., 1937. Historical Outline of the Zoological Work of the State Museum, in: New York State Museum Bulletin. pp. 101-105.
Stoner, D., 1950. Extant New York State Specimens of the Adirondack Cougar, New York State Museum Circular. The University of the State of New York, Albany, New York.
Stoner, D., 1935. Highway Mortality among Mammals. Science 81, 401-402. doi:10.1126/science.81.2104.401
Stoner, D., 1936. Wildlife Casualties on the Highways. The Wilson Bulletin 48, 276-283.
Stoner, D., 1941. Homing Instinct in the Bank Swallow. Bird-Banding 12, 104-109. doi:10.2307/4509677
Stoner, D., 1944. Acquisition of a Bird Collection by the New York State Museum. Science 99, 379. doi:10.1126/science.99.2576.379-a
Stoner, D.H., 1933. Superstitions and Facts about Kingfishers. University of the State of New York Bulletin to the Schools 19, 165-167.
Stoner, D., 1940. The Canada Porcupine as Highway Casualty. Journal of Mammalogy 21, 360-361. doi:10.2307/1374767
Stoner, D., 1938. The Fisher is a Foe of the Porcupine in New York State. Journal of Mammalogy 19, 373-374.
Stoner, D., Stoner, L.C., 1937. A Six-Year-Old Bank Swallow. Bird Binding 8, 175-176.
Stoner, D., 1942. Longevity and Other Data on a Captive English Sparrow. The Auk 59, 440-442. doi:10.2307/4079230
Stoner, D., 1938. Longevity in the Bank Swallow. Bird-Banding 9, 173-177.
Stoner, D., 1935. An Example of Partial Albinism in the Eastern Crow. The Wilson Bulletin 47, 274-276.
Stoner, D., 1939. Temperature, Growth and Other Studies on Eastern Phoebe, New York State Museum Circular. The University of the State of New York, Albany, New York.

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