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Journal Article
Clarke, J.M., 1899. Notes on the Early Stages of Certain Goniatites. New York State Museum Annual Report 50, 163-169.
Clarke, J.M., 1892. Observations on the Terataspisgrandis, Hall, the Largest Known Trilobite. New York State Museum Annual Report 44, 111-114.
Clarke, J.M., 1921. The Oldest of the Forests. The Scientific Monthly 12, 83-91.
Clarke, J.M., 1902. The Onondaga Lake Squids. Science 16, 991.
Clarke, J.M., 1918. Possible Derivation of the Lepadid Barnacles from the Phyllopods. Proceedings of the National Academy of Sciences 4, 384-386.
Clarke, J.M., 1916. The Reincarnation of James Eights, Antarctic Explorer. The Scientific Monthly 2, 189-202.
Clarke, J.M., 1894. Report on Field -work in Chenango County. New York State Museum Annual Report 47, 723-751.