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1909

    1908

    Clarke, J., 1908. Early Devonic History of New York and Eastern North America; Part I. New York State Museum MemoirThe University of the State of New York, Albany, New York.
      Clarke, J., Luther, D., 1908. Geological Maps and Descriptions of the Portage and Nunda Quadrangles. New York State Museum BulletinThe University of the State of New York, Albany, New York.
        Clarke, J., 1908. The Beginings of Dependent Life, in: Clarke, J. (Ed.), Fourth Report of the Director of the Science DivisionThe University of the State of New York, Albany, New York. pp. 146-169.
          Parker, A., 1908. Report on the Archaeology Section, in: Clarke, J. (Ed.), Fourth Report of the Director of the Science DivisionThe University of the State of New York, Albany, New York. pp. 85-110.

            1906

            Clarke, J., Peck, C., 1906. Report of the State Botanist 1905. New York State Museum BulletinThe University of the State of New York, Albany, New York.

              1905

              Clarke, J., 1905. Catalogue of Type Specimens of Paleozoic Fossils in New York State Museum. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                Clarke, J., Luther, D., 1905. Geologic Map of the Tully Quadrangle. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                  Clarke, J., Luther, D., 1905. Geology of the Watkins and Elmira Quadrangles Accompanied by a Geologic Map. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                    Clarke, J., Peck, C., 1905. Report of the State Botanist 1904. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                      Clarke, J., 1905. Report of the State Paleontologist 1903. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                        Clarke, J., 1905. Pierce: A Brief Sketch of its Geology, in: Clarke, J. (Ed.), Report of the State Paleontologist 1903The University of the State of New York, Albany, New York. pp. 134-172.
                          Ruedemann, R., 1905. Structure of Some Primitive Cephalopods, in: Clarke, J. (Ed.), Report of the State Paleontologist 1903The University of the State of New York, Albany, New York. pp. 296-341.

                            1904

                            Clarke, J., 1904. Naples Fauna in western New York, Part II. New York State Museum MemoirThe University of the State of New York, Albany, New York.
                              Clarke, J., Luther, D., 1904. Stratigraphic and Paleontologic map of Canandaigua and Naples quadrangles. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                Luther, D., Clarke, J., 1904. Stratigraphic and Paleontologic Map of Canandaigua and Naples Quadrangles. New York State Museum BulletinThe University of the State of New York, Albany, New York.

                                  1903

                                  Clarke, J., 1903. Catalogue of Type Specimens of Paleozoic Fossils in New York State Museum. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                    Clarke, J., Ruedemann, R., 1903. Guelph Fauna in the State of New York. New York State Museum MemoirThe University of the State of New York, Albany, New York.
                                      Merrill, F., Clarke, J., 1903. Report of the State Paleontologist 1902. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                        Merrill, F., Clarke, J., 1903. Report of the State Paleontologist 1902. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                          Clarke, J., 1903. Construction of the Olean Hock Section, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1902The University of the State of New York, Albany, New York. pp. 996-999.
                                            Clarke, J., 1903. Mastodons of New York, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1902The University of the State of New York, Albany, New York. pp. 934-958.
                                              Clarke, J., 1903. Some Devonic Works, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1902The University of the State of New York, Albany, New York. pp. 1231-1238.
                                                Ruedemann, R., 1903. Cambric Dictyonema Fauna in the Slate Belt of Eastern New York, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1902The University of the State of New York, Albany, New York. pp. 934-954.

                                                  1902

                                                  Merrill, F., Clarke, J., 1902. Report of the State Paleontologist 1901. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                                    Clarke, J., 1902. The Water Biscuit of Squaw Island, Canandaigua Lake, N.Y.. New York State Museum Annual Report 54, 195-198.
                                                      Clarke, J., 1902. The Squids from Onondaga Lake, N.Y.. Science 16, 947-948.
                                                        Clarke, J., Ruedemann, R., Luther, D., 1902. Contact Lines of Upper Siluric Formations on the Brockport and Medina Quadrangles, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1901The University of the State of New York, Albany, New York. pp. 517-523.
                                                          Clarke, J., 1902. Indigene and Alien Faunas of the New York Devonic, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1901The University of the State of New York, Albany, New York. pp. 664-684.
                                                            Clarke, J., 1902. Paleontologic Results of the Areal Survey of the Olean Quadrangle, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1901The University of the State of New York, Albany, New York. pp. 524-528.
                                                              Ruedemann, R., 1902. Graptolite Facies, of the Beekmantown Formation in Rensselaer County, N.Y., in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1901The University of the State of New York, Albany, New York. pp. 546-575.
                                                                Ruedemann, R., 1902. Growth and Development of Goniograptus tuttireaui McCoy, in: Merrill, J., Clarke, J. (Eds.), Report of the State Paleontologist 1901The University of the State of New York, Albany, New York. pp. 576-592.
                                                                  Clarke, J., 1902. Dictyonine Hexactinellid Sponges from the Upper Devonic of New York. New York State Museum Annual Report 54, 187-190.
                                                                    Clarke, J., 1902. Notes of Paleozoic Crustaceans. New York State Museum Annual Report 54, 83-119.
                                                                      Clarke, J., 1902. The Onondaga Lake Squids. Science 16, 991.

                                                                        1901

                                                                        Merrill, F., Clarke, J., 1901. Paleontologic Papers 2. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                                                          Clarke, J., 1901. The Maryland Eocene Book. Science 14, 27.
                                                                            Clarke, J., 1901. Amnigenia as an Indicator of Freshwater Deposits during the Devonic of New York, Ireland and the Rhineland, in: Merrill, J., Clarke, J. (Eds.), Paleontologic Papers 2The University of the State of New York, Albany, New York. pp. 199-204.
                                                                              Clarke, J., 1901. Marcellus Limestones of Central and Western New York and Their Fauna, in: Merrill, J., Clarke, J. (Eds.), Paleontologic Papers 2The University of the State of New York, Albany, New York. pp. 115-138.
                                                                                Clarke, J., 1901. New Agelacrinites, in: Merrill, J., Clarke, J. (Eds.), Paleontologic Papers 2The University of the State of New York, Albany, New York. pp. 182-198.
                                                                                  Ruedemann, R., 1901. Trenton conglomerate of Rysedorph Hill and Its Fauna, in: Merrill, J., Clarke, J. (Eds.), Paleontologic Papers 2The University of the State of New York, Albany, New York. pp. 3-114.

                                                                                    1900

                                                                                    Clarke, J., 1900. The Oriskany Fauna of Becraft Mountain, Columbia County, New York. New York State Museum MemoirThe University of the State of New York, Albany, New York.
                                                                                      Clarke, J., 1900. Paleontologic Papers. New York State Museum BulletinThe University of the State of New York, Albany, New York.
                                                                                        Clarke, J., 1900. Dictyonine hexactineIIid sponges from the Upper Devonic of New York, in: Clarke, J. (Ed.), Paleontologic PapersThe University of the State of New York, Albany, New York. pp. 187-194.