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Hall, J., 1857. Direction of the Currents of Deposition and Source of the Materials of the Older Paleozoic Rocks. Canadian Naturalist and Quarterly Journal of Science 2, 284-286.
Hall, J., 1865. On the Occurrence of an Internal Convoluted Plate within the Body of Certain Species of Crinoidea. Proceedings of the Boston Society of Natural History 10, 33-34.
Hall, J., 1844. Geological Survey of New York. Agricultural Society Transactions 3, 241-278.
Hall, J., 1890. Report of the State Geologist. New York State Museum Annual Report 43, 207-274.
Hall, J., 1879. Fauna of the Niagara Group in Central Indiana. New York State Museum Annual Report 28, 99-203.
Hall, J., 1859. Observations on the Genus Nucleospira. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 24-26.
Hall, J., 1884. Fossil Corals from the Niagara and Upper Helderberg Group. New York State Museum Annual Report 35, 407-464.
Hall, J., 1869. Report of the Curator. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 22, 1-8.
Hall, J., 1893. Report of Geologist. New York State Museum Annual Report 46, 151-288.
Hall, J., 1850. On the Brachiopoda of the Silurian Period; Particularly the Leptaenidae. Proceedings of the American Association for the Advancement of Science 2, 347-351.
Hall, J., 1860. On the Formation of Mountain Ranges. Canadian Journal of Natural Sciences 5, 542-544.
Hall, J., 1885. Note on the intimate relations of the Chemung Group and Waverly Sandstone in Northwestern Pennsylvania and Southwestern New York. Proceedings of the American Association for the Advancement of Science 33, 416-419.
Hall, J., 1873. New or Imperfectly Known Forms among the Brachiopoda. New York State Museum Annual Report 23, 244-247.
Hall, J., 1844. Observations on Brachiopoda and Orthocerata. American Journal of Science 47, 109.

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