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Hall, J., 1859. Observations on the genera Platyostoma and Strophostylus. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 12, 20-21.
Hall, J., 1884. Lamellibranchiate Shells of the Upper Helderberg, Hamilton and Chemung Groups. New York State Museum Annual Report 35, 215-406g.
Hall, J., 1868. New or Little Known Species of Fossils from Rocks of the Age of the Niagara Group. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 20 rev., 347-438.
Hall, J., 1848. Catalogue of Specimens in the Paleontological Department of the Geological Survey. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History, with Catalogue of the Same 1, 15p.
Hall, J., 1871. Cohoes Mastodon. New York State Museum Annual Report 21, 99-148.
Hall, J., 1850. On the Trails and Tracks in the Sandstones of the Clinton Group of New York. Proceedings of the American Association for the Advancement of Science 2, 256-260.
Hall, J., 1860. Descriptions of New Species of Fossils from the Silurian Rocks of Nova Scotia. Canadian Naturalist and Quarterly Journal of Science 5, 144-159.
Hall, J., 1885. On the Lamellibranchiate Fauna of the Upper Helderberg, Hamilton, Portage, Chemung, and Catskill Groups. British Association for the Advancement of Science Report 54, 726-727.
Hall, J., 1864. Preliminary Notice of Some Species of Crinoida rfom the Waverly Sandstone Series of Summit County, Ohio, Supposed to be the Age of the Chemung Group of New York. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 17, 50-60.
Hall, J., 1844. The Geological Survey of New York. New York State Agricultural Society Transactions 3, 241-277.
Hall, J., 1887. Report of Geologist. New York State Museum Annual Report 40, 155-163.
Hall, J., 1891. On the family Orthidae of the Brachiopoda. Geological Society of America Bulletin 2, 636.
Hall, J., Whitfield, R.P., 1875. Crinoidea of the Waverly Group. Ohio Division of Geological Survey Bulletin Rpt 2, 162-179.
Hall, J., 1858. Report [on Canadian graptolites]. Progress Report-Geological Survey of Canada 109-145.
Hall, J., 1883. On the Structure of the Shell in the Genus Orthis. New York State Museum Annual Report 36, 73-75.
Hall, J., 1867. Introduction to the Study of the Graptolitidae. Annual Report of the Regents of the University, on the Condition of the State Cabinet of Natural History 20, 201-275.
Hall, J., 1846. On a Deposit at Clyde, New York, Containing a Cranium of Castoroides ohioensis. Proceedings of the Boston Society of Natural History 4, 167-168.

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